Hierarchy For All Packages
Package Hierarchies:- org.jmol.adapter.readers.cif,
- org.jmol.adapter.readers.molxyz,
- org.jmol.adapter.readers.more,
- org.jmol.adapter.readers.pdb,
- org.jmol.adapter.readers.pymol,
- org.jmol.adapter.readers.quantum,
- org.jmol.adapter.readers.simple,
- org.jmol.adapter.readers.spartan,
- org.jmol.adapter.readers.xml,
- org.jmol.adapter.readers.xtal,
- org.jmol.adapter.smarter,
- org.jmol.adapter.writers,
- org.jmol.api,
- org.jmol.api.js,
- org.jmol.appletjs,
- org.jmol.atomdata,
- org.jmol.awt,
- org.jmol.awtjs,
- org.jmol.awtjs.swing,
- org.jmol.awtjs2d,
- org.jmol.bspt,
- org.jmol.c,
- org.jmol.console,
- org.jmol.consolejs,
- org.jmol.dialog,
- org.jmol.dssx,
- org.jmol.export,
- org.jmol.g3d,
- org.jmol.geodesic,
- org.jmol.i18n,
- org.jmol.image,
- org.jmol.inchi,
- org.jmol.io,
- org.jmol.jsv,
- org.jmol.jvxl.api,
- org.jmol.jvxl.calc,
- org.jmol.jvxl.data,
- org.jmol.jvxl.readers,
- org.jmol.minimize,
- org.jmol.minimize.forcefield,
- org.jmol.modelkit,
- org.jmol.modelset,
- org.jmol.modelsetbio,
- org.jmol.multitouch,
- org.jmol.multitouch.jni,
- org.jmol.multitouch.sparshui,
- org.jmol.navigate,
- org.jmol.popup,
- org.jmol.quantum,
- org.jmol.quantum.mo,
- org.jmol.render,
- org.jmol.renderbio,
- org.jmol.rendercgo,
- org.jmol.renderspecial,
- org.jmol.rendersurface,
- org.jmol.script,
- org.jmol.scriptext,
- org.jmol.shape,
- org.jmol.shapebio,
- org.jmol.shapecgo,
- org.jmol.shapespecial,
- org.jmol.shapesurface,
- org.jmol.smiles,
- org.jmol.symmetry,
- org.jmol.thread,
- org.jmol.translation,
- org.jmol.util,
- org.jmol.viewer,
- org.jmol.viewer.binding,
- org.openscience.jmol.app,
- org.openscience.jmol.app.janocchio,
- org.openscience.jmol.app.jmolpanel,
- org.openscience.jmol.app.jmolpanel.console,
- org.openscience.jmol.app.jsonkiosk,
- org.openscience.jmol.app.surfacetool,
- org.openscience.jmol.app.webexport,
- org.openscience.jvxl,
- org.openscience.jvxl.simplewriter
Class Hierarchy
- java.lang.Object
- org.jmol.export.___Exporter
- org.jmol.export.__CartesianExporter
- org.jmol.export._IdtfExporter
- org.jmol.export._MayaExporter
- org.jmol.export._ObjExporter
- org.jmol.export._VrmlExporter
- org.jmol.export._StlExporter
- org.jmol.export._X3dExporter
- org.jmol.export.JSExporter
- org.jmol.export.__RayTracerExporter
- org.jmol.export._PovrayExporter
- org.jmol.export._TachyonExporter
- org.jmol.export.__CartesianExporter
- javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
- org.openscience.jmol.app.jmolpanel.DisplayPanel.CheckBoxMenuItemAction
- org.openscience.jmol.app.jmolpanel.DisplayPanel.DefineCenterAction
- org.openscience.jmol.app.jmolpanel.DisplayPanel.HomeAction
- org.openscience.jmol.app.jmolpanel.DisplayPanel.MoveToAction
- org.openscience.jmol.app.jmolpanel.DisplayPanel.SetStatusAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.AboutAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.AtomSetChooserAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.CloseAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ConsoleAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.CopyImageAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.CopyScriptAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.CreditsAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ExecuteScriptAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ExitAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ExportAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.GaussianAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.NewAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.OpenAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.OpenMolAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.OpenPdbAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.OpenUrlAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.NewwinAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.PasteClipboardAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.PovrayAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.PrintAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.RecentFilesAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ResizeAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ScriptEditorAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ScriptWindowAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.SurfaceToolAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ToWebAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.UguideAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.ViewMeasurementTableAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.WhatsNewAction
- org.openscience.jmol.app.jmolpanel.JmolPanel.WriteAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.DeselectallAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.FrameDeltaDisplayAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.PickAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.PopulationDisplayAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.RotateAction
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel.SelectallAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.AtomSetChooserAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.DetachAppletAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.JumpBestFrameAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.LabelNmrAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.MoleculeDependentAction (implements java.beans.PropertyChangeListener)
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.ViewCoupleTableAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.ViewNoeTableAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReadNamfisAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReadNmrAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReattachAppletAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.SaveNmrAction
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.WriteNamfisAction
- org.openscience.jmol.app.jmolpanel.PreferencesDialog.PrefsAction
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
- java.util.AbstractList<E> (implements java.util.List<E>)
- java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
- javajs.util.Lst<V>
- org.jmol.smiles.SmilesRingSet
- javajs.util.Lst<V>
- java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
- java.util.AbstractList<E> (implements java.util.List<E>)
- javax.swing.text.AbstractDocument (implements javax.swing.text.Document, java.io.Serializable)
- javax.swing.text.DefaultStyledDocument (implements javax.swing.text.StyledDocument)
- org.openscience.jmol.app.jmolpanel.console.AppConsole.ConsoleDocument
- org.jmol.console.ScriptEditor.EditorDocument
- javax.swing.text.DefaultStyledDocument (implements javax.swing.text.StyledDocument)
- javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
- org.openscience.jmol.app.janocchio.CoupleTable.CoupleTableModel
- org.openscience.jmol.app.jmolpanel.MeasurementTable.MeasurementTableModel
- org.openscience.jmol.app.janocchio.NoeTable.NoeTableModel
- org.openscience.jmol.app.janocchio.TableSorter
- org.jmol.viewer.ActionManager (implements org.jmol.api.EventManager)
- org.jmol.multitouch.ActionManagerMT (implements org.jmol.multitouch.JmolMultiTouchClient)
- org.jmol.adapter.readers.quantum.AdfReader.SymmetryData
- org.jmol.viewer.AnimationManager
- org.jmol.dssx.AnnotationParser (implements org.jmol.api.JmolAnnotationParser)
- org.jmol.dssx.DSSR1
- org.openscience.jmol.app.webexport.ArrayListTransferHandler.ArrayListTransferable (implements java.awt.datatransfer.Transferable)
- org.openscience.jvxl.simplewriter.ASimpleJvxlWriter
- org.jmol.modelset.AtomCollection
- org.jmol.modelset.BondCollection
- org.jmol.modelset.ModelSet
- org.jmol.modelset.BondCollection
- org.jmol.modelset.AtomCollection.AtomSorter (implements java.util.Comparator<T>)
- org.jmol.atomdata.AtomData
- org.jmol.adapter.smarter.AtomIterator (implements org.jmol.api.JmolAdapterAtomIterator)
- org.jmol.modelset.AtomIteratorWithinModel (implements org.jmol.api.AtomIndexIterator)
- org.jmol.modelset.AtomIteratorWithinModelSet
- org.jmol.adapter.smarter.AtomSetCollection
- org.jmol.adapter.smarter.AtomSetCollectionReader (implements javajs.api.GenericLineReader)
- org.jmol.adapter.readers.xtal.AbinitReader
- org.jmol.adapter.readers.xtal.AimsReader
- org.jmol.adapter.readers.simple.AlchemyReader
- org.jmol.adapter.readers.simple.AmpacReader
- org.jmol.adapter.readers.quantum.BasisFunctionReader
- org.jmol.adapter.readers.quantum.MOReader
- org.jmol.adapter.readers.quantum.GaussianReader
- org.jmol.adapter.readers.quantum.GaussianFchkReader
- org.jmol.adapter.readers.quantum.GenNBOReader
- org.jmol.adapter.readers.quantum.JaguarReader
- org.jmol.adapter.readers.quantum.NWChemReader
- org.jmol.adapter.readers.quantum.PsiReader
- org.jmol.adapter.readers.quantum.QchemReader
- org.jmol.adapter.readers.quantum.SlaterReader
- org.jmol.adapter.readers.quantum.AdfReader
- org.jmol.adapter.readers.quantum.DgridReader
- org.jmol.adapter.readers.quantum.MopacSlaterReader
- org.jmol.adapter.readers.quantum.CsfReader
- org.jmol.adapter.readers.quantum.GamessReader
- org.jmol.adapter.readers.quantum.GamessUKReader
- org.jmol.adapter.readers.quantum.GamessUSReader
- org.jmol.adapter.readers.quantum.MoldenReader
- org.jmol.adapter.readers.quantum.QCJSONReader
- org.jmol.adapter.readers.quantum.MopacGraphfReader
- org.jmol.adapter.readers.quantum.WebMOReader
- org.jmol.adapter.readers.quantum.GaussianReader
- org.jmol.adapter.readers.spartan.SpartanInputReader
- org.jmol.adapter.readers.spartan.OdysseyReader
- org.jmol.adapter.readers.spartan.SpartanSmolReader
- org.jmol.adapter.readers.spartan.SpartanReader
- org.jmol.adapter.readers.quantum.MOReader
- org.jmol.adapter.readers.xtal.BilbaoReader
- org.jmol.adapter.readers.more.BinaryDcdReader
- org.jmol.adapter.readers.xtal.CastepReader
- org.jmol.adapter.readers.xtal.CgdReader
- org.jmol.adapter.readers.cif.CifReader
- org.jmol.adapter.readers.cif.Cif2Reader
- org.jmol.adapter.readers.cif.MMCifReader
- org.jmol.adapter.readers.cif.MMTFReader
- org.jmol.adapter.readers.xtal.CrystalReader
- org.jmol.adapter.readers.simple.CubeReader
- org.jmol.adapter.readers.xtal.DmolReader
- org.jmol.adapter.readers.xtal.EspressoReader
- org.jmol.adapter.readers.simple.FAHReader
- org.jmol.adapter.readers.simple.FoldingXyzReader
- org.jmol.adapter.readers.simple.TinkerReader
- org.jmol.adapter.readers.more.ForceFieldReader
- org.jmol.adapter.readers.more.MdTopReader
- org.jmol.adapter.readers.more.Mol2Reader
- org.jmol.adapter.readers.quantum.GaussianWfnReader
- org.jmol.adapter.readers.simple.GhemicalMMReader
- org.jmol.adapter.readers.more.GromacsReader
- org.jmol.adapter.readers.xtal.GulpReader
- org.jmol.adapter.readers.simple.HyperChemReader
- org.jmol.adapter.readers.simple.InputReader
- org.jmol.adapter.readers.simple.MopacArchiveReader
- org.jmol.adapter.readers.xtal.JanaReader
- org.jmol.adapter.readers.simple.JmeReader
- org.jmol.adapter.readers.simple.JSONReader
- org.jmol.adapter.readers.xtal.MagresReader
- org.jmol.adapter.readers.more.MdCrdReader
- org.jmol.adapter.readers.molxyz.MolReader
- org.jmol.adapter.readers.more.JcampdxReader (implements org.jmol.api.JmolJDXMOLReader)
- org.jmol.adapter.readers.molxyz.Mol3DReader
- org.jmol.adapter.readers.simple.MopacReader
- org.jmol.adapter.readers.xtal.OptimadeReader
- org.jmol.adapter.readers.simple.OrcaReader
- org.jmol.adapter.readers.pdb.PdbReader
- org.jmol.adapter.readers.pdb.JmolDataReader
- org.jmol.adapter.readers.pdb.P2nReader
- org.jmol.adapter.readers.pdb.PqrReader
- org.jmol.adapter.readers.pymol.PyMOLReader (implements org.jmol.api.PymolAtomReader)
- org.jmol.adapter.readers.xtal.PWmatReader
- org.jmol.adapter.readers.xtal.ShelxReader
- org.jmol.adapter.readers.xtal.SiestaReader
- org.jmol.adapter.readers.more.TlsDataOnlyReader
- org.jmol.adapter.readers.xtal.VaspOutcarReader
- org.jmol.adapter.readers.xtal.VaspPoscarReader
- org.jmol.adapter.readers.more.AFLOWReader
- org.jmol.adapter.readers.xtal.VaspChgcarReader
- org.jmol.adapter.readers.xtal.Wien2kReader
- org.jmol.adapter.readers.xtal.XcrysdenReader
- org.jmol.adapter.readers.xml.XmlReader
- org.jmol.adapter.readers.xml.XmlArgusReader
- org.jmol.adapter.readers.xml.XmlChem3dReader
- org.jmol.adapter.readers.xml.XmlChemDrawReader
- org.jmol.adapter.readers.xml.XmlCmlReader
- org.jmol.adapter.readers.xml.XmlMOReader
- org.jmol.adapter.readers.xml.XmlMolproReader
- org.jmol.adapter.readers.xml.XmlMOReader
- org.jmol.adapter.readers.xml.XmlMagResReader
- org.jmol.adapter.readers.xml.XmlOdysseyReader
- org.jmol.adapter.readers.xml.XmlQEReader
- org.jmol.adapter.readers.xml.XmlVaspReader
- org.jmol.adapter.readers.xml.XmlXsdReader
- org.jmol.adapter.readers.molxyz.XyzReader
- org.jmol.adapter.smarter.AtomSetObject
- org.jmol.adapter.smarter.Bond
- org.jmol.adapter.readers.cif.TopoCifParser.TLink
- org.jmol.adapter.smarter.Bond
- org.jmol.minimize.forcefield.AtomType
- org.jmol.image.AviCreator (implements org.jmol.api.JmolMovieCreatorInterface)
- org.jmol.awt.AwtClipboard (implements java.awt.datatransfer.Transferable)
- org.jmol.awt.AwtFont
- org.jmol.awt.AwtG2D (implements org.jmol.api.GenericGraphics)
- org.jmol.awt.AwtPopupHelper (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, org.jmol.popup.PopupHelper)
- org.jmol.awt.AwtSwingComponent (implements org.jmol.api.SC)
- org.jmol.modelsetbio.BasePair
- org.jmol.adapter.readers.quantum.BasisFunctionReader.MOEnergySorter (implements java.util.Comparator<T>)
- org.jmol.viewer.binding.Binding
- org.jmol.viewer.binding.JmolBinding
- org.jmol.viewer.binding.DragBinding
- org.jmol.viewer.binding.PfaatBinding
- org.jmol.viewer.binding.RasmolBinding
- org.jmol.viewer.binding.JmolBinding
- org.jmol.modelsetbio.BioExt
- org.jmol.modelsetbio.BioModelSet
- org.jmol.modelsetbio.BioPolymer (implements org.jmol.modelset.Structure)
- org.jmol.modelsetbio.AlphaPolymer
- org.jmol.modelsetbio.AminoPolymer
- org.jmol.modelsetbio.CarbohydratePolymer
- org.jmol.modelsetbio.PhosphorusPolymer
- org.jmol.modelsetbio.NucleicPolymer
- org.jmol.modelsetbio.AlphaPolymer
- org.jmol.modelsetbio.BioResolver (implements java.util.Comparator<T>)
- org.jmol.modelset.BondIteratorSelected (implements org.jmol.modelset.BondIterator)
- org.jmol.util.BoxInfo
- org.jmol.dssx.Bridge
- javajs.util.BS (implements java.lang.Cloneable, javajs.api.JSONEncodable)
- org.jmol.modelset.BondSet
- org.jmol.smiles.SmilesRing
- org.jmol.bspt.Bspf
- org.jmol.bspt.Bspt
- org.jmol.util.BSUtil
- org.jmol.awtjs.swing.ButtonGroup
- org.jmol.util.BZone
- org.jmol.util.C
- org.jmol.minimize.forcefield.Calculation
- org.jmol.minimize.forcefield.MMFFAngleCalc
- org.jmol.minimize.forcefield.MMFFDistanceCalc
- org.jmol.minimize.forcefield.MMFFESCalc
- org.jmol.minimize.forcefield.MMFFOOPCalc
- org.jmol.minimize.forcefield.MMFFSBCalc
- org.jmol.minimize.forcefield.MMFFTorsionCalc
- org.jmol.minimize.forcefield.MMFFVDWCalc
- org.jmol.minimize.forcefield.UFFAngleCalc
- org.jmol.minimize.forcefield.UFFDistanceCalc
- org.jmol.minimize.forcefield.UFFOOPCalc
- org.jmol.minimize.forcefield.UFFTorsionCalc
- org.jmol.minimize.forcefield.UFFVDWCalc
- org.jmol.minimize.forcefield.Calculations
- org.jmol.minimize.forcefield.CalculationsMMFF
- org.jmol.minimize.forcefield.CalculationsUFF
- org.jmol.awtjs.swing.Cell
- org.jmol.modelset.Chain (implements org.jmol.modelset.Structure)
- org.jmol.viewer.ChimeMessenger (implements org.jmol.viewer.JmolChimeMessenger)
- javajs.util.CifDataParser (implements javajs.api.GenericCifDataParser)
- org.jmol.adapter.readers.cif.Cif2DataParser
- org.jmol.symmetry.CIPChirality
- org.jmol.symmetry.CIPChirality.CIPAtom (implements java.lang.Cloneable, java.lang.Comparable<T>)
- org.jmol.symmetry.CIPData
- org.jmol.symmetry.CIPDataSmiles
- org.jmol.symmetry.CIPDataTracker
- org.jmol.symmetry.CIPDataTracker.CIPTracker
- org.jmol.g3d.CircleRenderer (implements org.jmol.g3d.G3DRenderer)
- org.jmol.adapter.writers.CMLWriter (implements org.jmol.api.JmolWriter)
- java.awt.Color (implements java.awt.Paint, java.io.Serializable)
- org.jmol.awt.AwtColor (implements javajs.api.GenericColor)
- org.jmol.awtjs.swing.Color (implements javajs.api.GenericColor)
- org.jmol.util.ColorEncoder
- org.jmol.viewer.ColorManager
- org.jmol.util.CommandHistory
- java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
- java.awt.Container
- javax.swing.JComponent (implements java.io.Serializable)
- javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
- javax.swing.JButton (implements javax.accessibility.Accessible)
- org.jmol.console.JmolButton (implements org.jmol.api.JmolAbstractButton)
- org.openscience.jmol.app.jmolpanel.JmolPanel.AnimButton (implements java.awt.event.MouseListener)
- org.jmol.console.JmolButton (implements org.jmol.api.JmolAbstractButton)
- javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
- javax.swing.JCheckBoxMenuItem (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
- org.jmol.console.KeyJCheckBoxMenuItem (implements org.jmol.api.JmolAbstractButton)
- javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
- org.jmol.console.KeyJMenu (implements org.jmol.api.JmolAbstractButton)
- javax.swing.JRadioButtonMenuItem (implements javax.accessibility.Accessible)
- org.jmol.console.KeyJRadioButtonMenuItem (implements org.jmol.api.JmolAbstractButton)
- org.jmol.console.KeyJMenuItem (implements org.jmol.api.JmolAbstractButton)
- javax.swing.JCheckBoxMenuItem (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
- javax.swing.JToggleButton (implements javax.accessibility.Accessible)
- javax.swing.JCheckBox (implements javax.accessibility.Accessible)
- org.jmol.console.KeyJCheckBox (implements org.jmol.api.JmolAbstractButton)
- org.jmol.console.JmolToggleButton (implements org.jmol.api.JmolAbstractButton)
- javax.swing.JCheckBox (implements javax.accessibility.Accessible)
- javax.swing.JButton (implements javax.accessibility.Accessible)
- javax.swing.JFileChooser (implements javax.accessibility.Accessible)
- org.jmol.dialog.FileChooser
- javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
- javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
- org.openscience.jmol.app.janocchio.NMRTableCellRenderer
- org.jmol.console.JmolLabel (implements org.jmol.api.JmolAbstractButton)
- org.openscience.jmol.app.surfacetool.SurfaceToolGUI.SurfaceListCellRenderer (implements javax.swing.ListCellRenderer<E>)
- org.openscience.jmol.app.webexport.WebPanel.InstanceCellRenderer (implements javax.swing.ListCellRenderer<E>)
- javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
- javax.swing.JPanel (implements javax.accessibility.Accessible)
- org.openscience.jmol.app.janocchio.CoupleColourSelectionPanel
- org.openscience.jmol.app.janocchio.CoupleParameterSelectionPanel
- org.jmol.dialog.Dialog (implements org.jmol.api.JmolDialogInterface)
- org.openscience.jmol.app.jmolpanel.DisplayPanel (implements java.awt.event.ComponentListener, org.jmol.awt.JmolFrame, java.awt.print.Printable)
- org.openscience.jmol.app.janocchio.NMR_DisplayPanel
- org.jmol.dialog.FilePreview (implements java.beans.PropertyChangeListener)
- org.jmol.dialog.FilePreview.FPPanel
- org.openscience.jmol.app.janocchio.FrameCounter
- org.openscience.jmol.app.janocchio.FrameDeltaDisplay
- org.jmol.console.ImageDialog.ImageCanvas
- org.openscience.jmol.app.jmolpanel.JmolPanel (implements org.openscience.jmol.app.jsonkiosk.JsonNioClient, org.openscience.jmol.app.SplashInterface)
- org.openscience.jmol.app.Jmol
- org.openscience.jmol.app.janocchio.NMR_JmolPanel
- org.openscience.jmol.app.janocchio.LabelSetter
- org.openscience.jmol.app.webexport.Molecules
- org.openscience.jmol.app.janocchio.NamfisReader
- org.openscience.jmol.app.janocchio.NamfisSaver
- org.openscience.jmol.app.janocchio.NmrReader
- org.openscience.jmol.app.janocchio.NmrSaver
- org.openscience.jmol.app.janocchio.NoeColourSelectionPanel
- org.openscience.jmol.app.janocchio.NoeParameterSelectionPanel
- org.openscience.jmol.app.webexport.Orbitals
- org.openscience.jmol.app.janocchio.PopulationDisplay
- org.openscience.jmol.app.jmolpanel.StatusBar
- org.openscience.jmol.app.surfacetool.SurfaceToolGUI (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener, javax.swing.WindowConstants, java.awt.event.WindowFocusListener, java.awt.event.WindowListener)
- org.openscience.jmol.app.webexport.Test (implements java.awt.event.ActionListener)
- org.openscience.jmol.app.webexport.WebExport (implements java.awt.event.WindowListener)
- org.openscience.jmol.app.webexport.WebPanel (implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
- org.openscience.jmol.app.webexport.PopInJmol (implements javax.swing.event.ChangeListener)
- org.openscience.jmol.app.webexport.ScriptButtons
- javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
- org.openscience.jmol.app.janocchio.CoupleTable
- org.openscience.jmol.app.janocchio.NoeTable
- javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
- javax.swing.JEditorPane
- javax.swing.JTextPane
- org.openscience.jmol.app.jmolpanel.console.AppConsole.ConsoleTextPane (implements java.awt.event.KeyListener)
- org.jmol.console.AppletConsole.GenericTextPane (implements org.jmol.api.js.GenericConsoleTextArea)
- org.jmol.console.ScriptEditor.EditorTextPane
- javax.swing.JTextPane
- javax.swing.JTextArea
- org.jmol.console.AppletConsole.ControlEnterTextArea (implements org.jmol.api.js.GenericConsoleTextArea)
- org.openscience.jmol.app.jmolpanel.console.ConsoleTextArea
- javax.swing.JEditorPane
- javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
- java.awt.Window (implements javax.accessibility.Accessible)
- java.awt.Dialog
- javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- org.openscience.jmol.app.jmolpanel.AboutDialog (implements javax.swing.event.HyperlinkListener)
- org.openscience.jmol.app.jmolpanel.GaussianDialog (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.MouseListener)
- org.openscience.jmol.app.jmolpanel.HelpDialog (implements javax.swing.event.HyperlinkListener)
- org.openscience.jmol.app.jmolpanel.CreditsDialog
- org.openscience.jmol.app.jmolpanel.WhatsNewDialog
- org.jmol.console.ImageDialog (implements java.awt.event.ActionListener, org.jmol.api.GenericImageDialog, java.awt.event.WindowListener)
- org.openscience.jmol.app.jmolpanel.MeasurementTable
- org.openscience.jmol.app.jmolpanel.PovrayDialog
- org.openscience.jmol.app.jmolpanel.PreferencesDialog (implements java.awt.event.ActionListener)
- org.openscience.jmol.app.jmolpanel.RecentFilesDialog (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
- org.jmol.console.ScriptEditor (implements java.awt.event.ActionListener, org.jmol.api.JmolScriptEditorInterface, java.awt.event.WindowListener)
- javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- java.awt.Frame (implements java.awt.MenuContainer)
- javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- org.openscience.jmol.app.jmolpanel.AtomSetChooser (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.beans.PropertyChangeListener, java.lang.Runnable, javax.swing.event.TreeSelectionListener)
- org.openscience.jmol.app.jsonkiosk.BannerFrame
- org.openscience.jmol.app.jsonkiosk.KioskFrame
- javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- org.openscience.jmol.app.jmolpanel.Splash (implements org.openscience.jmol.app.SplashInterface)
- java.awt.Dialog
- javax.swing.JComponent (implements java.io.Serializable)
- java.awt.Container
- org.jmol.awtjs.swing.Component
- org.jmol.awtjs.swing.Container
- org.jmol.awtjs.swing.JComponent
- org.jmol.awtjs.swing.AbstractButton (implements org.jmol.api.SC)
- org.jmol.awtjs.swing.JButton
- org.jmol.awtjs.swing.JCheckBox
- org.jmol.awtjs.swing.JComboBox<T>
- org.jmol.awtjs.swing.JMenuItem
- org.jmol.awtjs.swing.JCheckBoxMenuItem
- org.jmol.awtjs.swing.JMenu
- org.jmol.awtjs.swing.JRadioButtonMenuItem
- org.jmol.awtjs.swing.JPopupMenu
- org.jmol.awtjs.swing.JComponentImp
- org.jmol.awtjs.swing.JContentPane
- org.jmol.awtjs.swing.JEditorPane
- org.jmol.awtjs.swing.JLabel
- org.jmol.awtjs.swing.JPanel
- org.jmol.awtjs.swing.JScrollPane
- org.jmol.awtjs.swing.JSplitPane
- org.jmol.awtjs.swing.JTable (implements org.jmol.awtjs.swing.ColumnSelectionModel, org.jmol.awtjs.swing.ListSelectionModel)
- org.jmol.awtjs.swing.JTextField
- org.jmol.awtjs.swing.JTextPane (implements org.jmol.awtjs.swing.Document)
- org.jmol.awtjs.swing.AbstractButton (implements org.jmol.api.SC)
- org.jmol.awtjs.swing.JDialog
- org.jmol.awtjs.swing.JComponent
- org.jmol.awtjs.swing.Container
- org.jmol.viewer.Connection
- org.jmol.viewer.Connections
- org.jmol.util.ContactPair
- org.jmol.bspt.CubeIterator
- org.jmol.g3d.CylinderRenderer
- org.jmol.quantum.mo.DataAdder11H (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdder13I (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdder7F (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdder9G (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdderF (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdderG (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdderH (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.quantum.mo.DataAdderI (implements org.jmol.quantum.mo.DataAdder)
- org.jmol.viewer.DataManager (implements org.jmol.api.JmolDataManager)
- org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
- org.jmol.adapter.readers.xml.XmlHandler
- org.jmol.util.DefaultLogger (implements org.jmol.util.LoggerInterface)
- javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
- org.openscience.jmol.app.jmolpanel.AtomSetChooser.AtomSet
- org.jmol.dialog.Dialog.ExportChoiceListener (implements java.awt.event.ItemListener)
- org.jmol.dialog.Dialog.QualityListener (implements javax.swing.event.ChangeListener)
- java.util.Dictionary<K,V>
- java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
- org.jmol.export.UseTable
- java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
- org.jmol.awtjs.swing.Dimension
- org.jmol.shapespecial.Dipole
- org.jmol.awt.Display
- org.jmol.awtjs2d.Display
- org.jmol.io.DOMReader
- org.jmol.dssx.DSSP
- org.jmol.dssx.DSSR0
- org.jmol.util.Edge (implements org.jmol.util.SimpleEdge)
- org.jmol.modelset.Bond
- org.jmol.modelset.HBond
- org.jmol.smiles.SmilesBond
- org.jmol.modelset.Bond
- org.jmol.util.EigenSort (implements java.util.Comparator<T>)
- org.jmol.bspt.Element
- org.jmol.util.Elements
- org.jmol.shapespecial.Ellipsoid
- org.jmol.geodesic.EnvelopeCalculation (implements org.jmol.api.JmolEnvCalc)
- org.jmol.util.Escape
- org.jmol.awtjs.Event
- org.jmol.export.Export3D (implements org.jmol.api.JmolRendererInterface)
- org.jmol.minimize.forcefield.FFParam
- java.io.File (implements java.lang.Comparable<T>, java.io.Serializable)
- org.jmol.awt.AwtFile (implements org.jmol.api.GenericFileInterface)
- org.jmol.awt.FileDropper (implements java.awt.dnd.DropTargetListener)
- javax.swing.filechooser.FileFilter
- org.jmol.dialog.Dialog.TypeFilter
- org.openscience.jmol.app.janocchio.MyFileFilter
- org.jmol.viewer.FileManager (implements javajs.api.BytePoster)
- org.jmol.io.FileReader
- org.openscience.jvxl.FileReader
- org.jmol.io.FilesReader (implements org.jmol.api.JmolFilesReaderInterface)
- org.jmol.util.Font
- org.jmol.minimize.forcefield.ForceField
- org.jmol.minimize.forcefield.ForceFieldMMFF
- org.jmol.minimize.forcefield.ForceFieldUFF
- org.jmol.util.GData (implements org.jmol.api.JmolGraphicsInterface)
- org.jmol.g3d.Graphics3D (implements org.jmol.api.JmolRendererInterface)
- org.jmol.util.GenericApplet (implements org.jmol.api.JmolAppletInterface, org.jmol.api.JmolStatusListener, javajs.api.JSInterface)
- org.jmol.appletjs.Jmol
- org.jmol.console.GenericConsole (implements org.jmol.api.JmolAppConsoleInterface, org.jmol.api.JmolCallbackListener)
- org.jmol.consolejs.AppletConsole
- org.jmol.console.JmolConsole (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
- org.openscience.jmol.app.jmolpanel.console.AppConsole (implements org.openscience.jmol.app.jmolpanel.console.EnterListener, org.jmol.api.JmolDropEditor)
- org.jmol.console.AppletConsole
- org.jmol.popup.GenericPopup (implements org.jmol.api.GenericMenuInterface)
- org.jmol.popup.JmolGenericPopup
- org.jmol.popup.JmolPopup
- org.jmol.awt.AwtJmolPopup
- org.jmol.awtjs2d.JSJmolPopup
- org.jmol.modelkit.ModelKitPopup
- org.jmol.awt.AwtModelKitPopup
- org.jmol.awtjs2d.JSModelKitPopup
- org.jmol.popup.JmolPopup
- org.jmol.popup.JmolGenericPopup
- org.jmol.util.Geodesic
- org.jmol.viewer.Gesture
- org.jmol.viewer.GlobalSettings
- org.jmol.awtjs.swing.Grid
- org.jmol.awtjs.swing.GridBagConstraints
- org.jmol.modelset.Group (implements org.jmol.modelset.Structure)
- org.jmol.modelsetbio.Monomer
- org.jmol.modelsetbio.AlphaMonomer
- org.jmol.modelsetbio.AminoMonomer
- org.jmol.modelsetbio.CarbohydrateMonomer
- org.jmol.modelsetbio.PhosphorusMonomer
- org.jmol.modelsetbio.NucleicMonomer
- org.jmol.modelsetbio.AlphaMonomer
- org.jmol.modelsetbio.Monomer
- org.jmol.i18n.GT (implements org.jmol.api.Translator)
- org.openscience.jmol.app.jmolpanel.GuiMap
- org.openscience.jmol.app.janocchio.NmrGuiMap
- org.jmol.symmetry.HallInfo
- org.jmol.symmetry.HallRotation
- org.jmol.symmetry.HallRotationTerm
- org.jmol.symmetry.HallTranslation
- org.openscience.jmol.app.jmolpanel.HelpDialog.PageLoader (implements java.lang.Runnable)
- org.jmol.g3d.HermiteRenderer (implements org.jmol.g3d.G3DRenderer)
- org.openscience.jmol.app.HistoryFile
- org.jmol.awt.Image
- org.jmol.awtjs2d.Image
- org.jmol.inchi.InChIJNI (implements org.jmol.api.JmolInChI)
- org.jmol.inchi.InChIJS (implements org.jmol.api.JmolInChI)
- java.io.InputStream (implements java.io.Closeable)
- java.io.FilterInputStream
- org.openscience.jvxl.MonitorInputStream
- java.io.FilterInputStream
- org.jmol.awtjs.swing.Insets
- org.jmol.util.Int2IntHash
- org.jmol.util.Int2IntHashEntry
- org.jmol.api.Interface
- org.jmol.jvxl.readers.IsoSolventReader.Face
- org.jmol.viewer.JC
- org.jmol.jsv.JDXMOLParser (implements org.jmol.api.JmolJDXMOLParser)
- org.jmol.api.JmolAdapter
- org.jmol.adapter.smarter.SmarterJmolAdapter
- org.jmol.api.JmolAdapterBondIterator
- org.jmol.adapter.smarter.BondIterator
- org.jmol.api.JmolAdapterStructureIterator
- org.jmol.adapter.smarter.StructureIterator
- org.openscience.jmol.app.JmolApp (implements org.jmol.api.JmolAppAPI)
- org.openscience.jmol.app.janocchio.Nmr
- org.openscience.jmol.app.JmolApp.OptSort (implements java.util.Comparator<T>)
- org.jmol.util.JmolAudio (implements org.jmol.api.JmolAudioPlayer, javax.sound.sampled.LineListener)
- org.jmol.console.JmolConsole.FileChecker (implements java.io.FilenameFilter)
- org.openscience.jmol.app.JmolData
- org.openscience.jmol.app.webexport.JmolInstance
- org.jmol.util.JmolMolecule
- org.jmol.smiles.SmilesSearch
- org.jmol.multitouch.JmolMultiTouchClientAdapter (implements org.jmol.multitouch.JmolMultiTouchAdapter)
- org.jmol.multitouch.jni.JmolJniClientAdapter
- org.jmol.multitouch.sparshui.JmolSparshClientAdapter (implements com.sparshui.client.SparshClient)
- org.jmol.adapter.readers.pymol.JmolObject
- org.openscience.jmol.app.jmolpanel.JmolPanel.ActionChangedListener (implements java.beans.PropertyChangeListener)
- org.openscience.jmol.app.jmolpanel.JmolResourceHandler
- org.jmol.viewer.JmolStateCreator
- org.jmol.viewer.StateCreator
- org.jmol.io.JmolUtil
- org.jmol.api.JmolViewer
- org.jmol.viewer.Viewer (implements org.jmol.atomdata.AtomDataServer, org.jmol.api.PlatformViewer)
- org.openscience.jmol.app.janocchio.NMR_Viewer
- org.jmol.viewer.Viewer (implements org.jmol.atomdata.AtomDataServer, org.jmol.api.PlatformViewer)
- org.jmol.awtjs2d.JSFile (implements org.jmol.api.GenericFileInterface)
- org.jmol.awtjs2d.JSFont
- org.jmol.awtjs2d.JsG2D (implements org.jmol.api.GenericGraphics)
- org.openscience.jmol.app.jsonkiosk.JsonNioClient.TouchHandler
- org.openscience.jmol.app.jsonkiosk.JsonNioService.JsonNioClientThread (implements java.lang.Runnable)
- org.openscience.jmol.app.jsonkiosk.JsonNioService.JsonNioServerThread (implements java.lang.Runnable)
- org.jmol.util.JSONWriter
- org.jmol.adapter.writers.QCJSONWriter (implements org.jmol.api.JmolWriter)
- org.jmol.jsv.JSpecView (implements org.jmol.api.JmolJSpecView)
- org.jmol.awtjs2d.JSPopupHelper (implements org.jmol.popup.PopupHelper)
- org.openscience.jvxl.Jvxl
- org.jmol.jvxl.data.JvxlCoder
- org.jmol.jvxl.data.JvxlData
- org.openscience.jvxl.simplewriter.JvxlWrite
- org.jmol.modelset.LabelToken
- org.jmol.i18n.Language
- org.jmol.awtjs.swing.LayoutManager
- org.jmol.awtjs.swing.BorderLayout
- org.jmol.awtjs.swing.FlowLayout
- org.jmol.awtjs.swing.GridBagLayout
- org.jmol.util.Logger
- org.openscience.jmol.app.webexport.LogPanel
- org.openscience.jmol.app.jmolpanel.LoopedStreams
- javajs.util.M34
- javajs.util.M4
- org.jmol.symmetry.SymmetryOperation
- javajs.util.M4
- org.jmol.jvxl.calc.MarchingSquares
- org.jmol.jvxl.calc.MarchingSquares.Triangle
- org.jmol.scriptext.MathExt
- org.openscience.jmol.app.janocchio.Measure (implements java.lang.Comparable<T>)
- org.openscience.jmol.app.janocchio.MeasureCouple
- org.openscience.jmol.app.janocchio.MeasureDist
- org.openscience.jmol.app.janocchio.MeasureNoe
- org.jmol.modelset.Measurement
- org.jmol.modelset.MeasurementPending
- org.jmol.modelset.MeasurementData (implements org.jmol.api.JmolMeasurementClient)
- org.jmol.util.MeshCapper
- org.jmol.util.MeshCapper.MeshCapperSorter (implements java.util.Comparator<T>)
- org.jmol.export.MeshData
- org.jmol.jvxl.data.MeshData.SortSet (implements java.util.Comparator<T>)
- org.jmol.jvxl.data.MeshData.SSet
- org.jmol.util.MeshSlicer
- org.jmol.util.MeshSurface
- org.jmol.shape.Mesh
- org.jmol.shapespecial.DrawMesh
- org.jmol.shapecgo.CGOMesh
- org.jmol.shapesurface.IsosurfaceMesh
- org.jmol.shapespecial.DrawMesh
- org.jmol.jvxl.data.MeshData
- org.jmol.shape.Mesh
- org.jmol.minimize.MinAtom
- org.jmol.minimize.Minimizer
- org.jmol.minimize.MinObject
- org.jmol.minimize.MinAngle
- org.jmol.minimize.MinBond
- org.jmol.minimize.MinPosition
- org.jmol.minimize.MinTorsion
- org.jmol.adapter.readers.cif.MMCifValidationParser
- org.jmol.minimize.MMConstraint
- org.jmol.modelset.Model
- org.jmol.modelsetbio.BioModel
- org.jmol.modelkit.ModelKit
- org.jmol.modelkit.ModelKit.Constraint
- org.jmol.modelset.ModelLoader
- org.jmol.viewer.ModelManager
- org.jmol.util.Modulation
- org.jmol.adapter.writers.MOLWriter
- org.jmol.viewer.MotionPoint
- org.jmol.awt.Mouse (implements org.jmol.api.GenericMouseInterface, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
- org.jmol.awtjs2d.Mouse (implements org.jmol.api.GenericMouseInterface)
- java.awt.event.MouseAdapter (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
- org.openscience.jmol.app.janocchio.TableSorter.MouseHandler
- org.jmol.viewer.MouseState
- org.jmol.thread.MoveToThread.Slider
- org.jmol.adapter.readers.cif.MSRdr (implements org.jmol.adapter.smarter.MSInterface)
- org.jmol.adapter.readers.cif.MSCifParser
- org.jmol.adapter.readers.quantum.NBOParser
- naga.NIOService
- org.openscience.jmol.app.jsonkiosk.JsonNioService (implements org.openscience.jmol.app.jsonkiosk.JsonNioServer)
- org.openscience.jmol.app.janocchio.NmrApplet
- org.jmol.quantum.NMRCalculation (implements org.jmol.api.JmolNMRInterface)
- org.openscience.jmol.app.janocchio.NmrMolecule
- org.openscience.jmol.app.janocchio.NmrMolecule.DihedralCouple
- org.jmol.quantum.NMRNoeMatrix
- org.jmol.quantum.NMRNoeMatrix.NOEAtom
- org.jmol.quantum.NMRNoeMatrix.NOEParams
- org.openscience.jmol.app.janocchio.NmrPlugin (implements org.openscience.jmol.app.JmolPlugin)
- org.openscience.jmol.app.janocchio.NmrResourceHandler
- org.jmol.util.Normix
- org.jmol.renderbio.NucleicRenderer
- org.jmol.modelset.Orientation
- org.jmol.viewer.OutputManager
- org.jmol.viewer.OutputManagerAwt
- org.jmol.viewer.OutputManagerJS
- org.jmol.jvxl.readers.Parameters
- org.jmol.util.Parser
- org.jmol.util.PatternMatcher (implements org.jmol.api.JmolPatternMatcher)
- org.jmol.adapter.writers.PDBWriter (implements org.jmol.api.JmolWriter)
- org.jmol.adapter.readers.pymol.PickleReader
- org.jmol.g3d.Pixelator
- org.jmol.g3d.PixelatorScreened
- org.jmol.g3d.PixelatorShaded
- org.jmol.g3d.PixelatorT
- org.jmol.awt.Platform (implements org.jmol.api.GenericPlatform)
- org.jmol.awtjs2d.Platform (implements org.jmol.api.GenericPlatform)
- org.jmol.awtjs.Platform
- org.jmol.g3d.Platform3D
- org.jmol.shapesurface.PMeshWriter
- org.jmol.translation.PO
- org.jmol.symmetry.PointGroup
- org.jmol.symmetry.PointGroup.Operation
- org.jmol.bspt.PointIterator
- org.jmol.shapespecial.Polyhedron
- org.jmol.smiles.PolyhedronStereoSorter (implements java.util.Comparator<T>)
- org.jmol.popup.PopupResource
- org.jmol.popup.MainPopupResourceBundle
- org.jmol.modelkit.ModelKitPopupResourceBundle
- org.jmol.g3d.PrecisionRenderer
- org.jmol.g3d.LineRenderer
- org.jmol.g3d.TriangleRenderer (implements org.jmol.g3d.G3DRenderer)
- org.jmol.viewer.PropertyManager (implements org.jmol.api.JmolPropertyManager)
- org.jmol.modelsetbio.ProteinStructure (implements org.jmol.modelset.Structure)
- org.jmol.modelsetbio.Annotation
- org.jmol.modelsetbio.Helix
- org.jmol.modelsetbio.Sheet
- org.jmol.modelsetbio.Turn
- org.jmol.adapter.readers.pymol.PyMOL
- org.jmol.adapter.readers.pymol.PyMOLGroup
- org.jmol.adapter.readers.pymol.PyMOLScene (implements org.jmol.api.JmolSceneGenerator)
- org.jmol.adapter.readers.quantum.QchemReader.MOInfo
- org.jmol.quantum.QS
- org.jmol.quantum.QuantumCalculation
- org.jmol.quantum.MepCalculation
- org.jmol.quantum.MlpCalculation
- org.jmol.quantum.MOCalculation
- org.jmol.quantum.QuantumPlaneCalculation
- org.jmol.quantum.NciCalculation
- org.jmol.quantum.MepCalculation
- org.jmol.atomdata.RadiusData
- org.jmol.util.Rectangle
- org.jmol.render.RepaintManager (implements org.jmol.api.JmolRepaintManager)
- org.jmol.adapter.smarter.Resolver
- org.jmol.i18n.Resource
- org.jmol.util.Rgb16
- org.jmol.renderbio.RocketRenderer
- javajs.util.SB
- org.jmol.adapter.writers.QCJSONWriter.SparseArray
- org.jmol.viewer.Scene
- org.jmol.script.ScriptContext
- org.jmol.console.ScriptEditor.EditorDocument.MyUndoableEditListener (implements javax.swing.event.UndoableEditListener)
- org.jmol.script.ScriptError (implements org.jmol.api.JmolScriptEvaluator)
- org.jmol.script.ScriptParam
- org.jmol.script.ScriptExpr
- org.jmol.script.ScriptEval
- org.jmol.script.ScriptExpr
- org.jmol.script.ScriptParam
- org.jmol.scriptext.ScriptExt
- org.jmol.script.ScriptFlowContext
- org.jmol.script.ScriptFunction (implements org.jmol.api.JmolScriptFunction)
- org.jmol.script.ScriptParallelProcessor (implements org.jmol.api.JmolParallelProcessor)
- org.jmol.script.ScriptManager (implements org.jmol.api.JmolScriptManager)
- org.jmol.script.ScriptMathProcessor
- org.jmol.script.ScriptProcess
- org.jmol.script.ScriptProcessRunnable (implements java.lang.Runnable)
- org.jmol.script.ScriptTokenParser
- org.jmol.script.ScriptCompiler
- org.jmol.viewer.SelectionManager
- org.jmol.util.Shader
- org.jmol.shape.Shape
- org.jmol.shape.AtomShape
- org.jmol.shape.Balls
- org.jmol.shapebio.BioShape
- org.jmol.shapespecial.Dots
- org.jmol.shapespecial.GeoSurface
- org.jmol.shapespecial.Ellipsoids
- org.jmol.shape.Halos
- org.jmol.shape.Labels
- org.jmol.shape.Measures (implements org.jmol.api.JmolMeasurementClient)
- org.jmol.shapespecial.Polyhedra (implements java.util.Comparator<T>)
- org.jmol.shape.Stars
- org.jmol.shapespecial.Vectors
- org.jmol.shapebio.BioShapeCollection
- org.jmol.shapespecial.Dipoles
- org.jmol.shape.FontLineShape
- org.jmol.shape.Frank
- org.jmol.shape.MeshCollection
- org.jmol.shapecgo.CGO
- org.jmol.shapespecial.Draw
- org.jmol.shapesurface.Isosurface (implements org.jmol.jvxl.api.MeshDataServer)
- org.jmol.shapesurface.Contact
- org.jmol.shapesurface.LcaoCartoon
- org.jmol.shapesurface.MolecularOrbital
- org.jmol.shapesurface.NBO
- org.jmol.shapesurface.Pmesh
- org.jmol.shapesurface.Plot3D
- org.jmol.shape.Sticks
- org.jmol.shape.TextShape
- org.jmol.shape.AtomShape
- org.jmol.viewer.ShapeManager
- org.jmol.render.ShapeRenderer
- org.jmol.render.BallsRenderer
- org.jmol.renderbio.BioShapeRenderer
- org.jmol.renderbio.BackboneRenderer
- org.jmol.renderbio.StrandsRenderer
- org.jmol.renderbio.MeshRibbonRenderer
- org.jmol.renderbio.RibbonsRenderer
- org.jmol.renderbio.RocketsRenderer
- org.jmol.renderbio.CartoonRenderer
- org.jmol.renderbio.TraceRenderer
- org.jmol.renderbio.MeshRibbonRenderer
- org.jmol.renderspecial.DipolesRenderer
- org.jmol.renderspecial.DotsRenderer
- org.jmol.renderspecial.GeoSurfaceRenderer
- org.jmol.renderspecial.EllipsoidsRenderer
- org.jmol.render.FontLineShapeRenderer
- org.jmol.render.CageRenderer
- org.jmol.render.AxesRenderer
- org.jmol.render.BbcageRenderer
- org.jmol.render.UccageRenderer
- org.jmol.render.LabelsRenderer
- org.jmol.render.EchoRenderer
- org.jmol.render.MeasuresRenderer
- org.jmol.render.SticksRenderer
- org.jmol.render.CageRenderer
- org.jmol.render.FrankRenderer
- org.jmol.render.HalosRenderer
- org.jmol.render.HoverRenderer
- org.jmol.render.MeshRenderer
- org.jmol.renderbio.BioMeshRenderer
- org.jmol.renderspecial.DrawRenderer
- org.jmol.rendercgo.CGORenderer
- org.jmol.rendersurface.IsosurfaceRenderer
- org.jmol.rendersurface.ContactRenderer
- org.jmol.rendersurface.LcaoCartoonRenderer
- org.jmol.rendersurface.MolecularOrbitalRenderer
- org.jmol.rendersurface.NBORenderer
- org.jmol.rendersurface.PmeshRenderer
- org.jmol.rendersurface.Plot3DRenderer
- org.jmol.renderspecial.PolyhedraRenderer
- org.jmol.render.StarsRenderer
- org.jmol.renderspecial.VectorsRenderer
- org.openscience.jvxl.simplewriter.SimpleMarchingCubesOld
- org.jmol.util.SimpleUnitCell
- org.jmol.symmetry.UnitCell (implements java.lang.Cloneable)
- org.jmol.multitouch.sparshui.SinglePointGesture (implements com.sparshui.gestures.Gesture)
- org.jmol.quantum.SlaterData
- org.jmol.adapter.readers.quantum.SlaterReader.OrbitalSorter (implements java.util.Comparator<T>)
- org.jmol.adapter.readers.quantum.SlaterReader.SlaterSorter (implements java.util.Comparator<T>)
- org.openscience.jmol.app.surfacetool.Slice
- org.jmol.smiles.SmilesAromatic
- org.jmol.scriptext.SmilesExt
- org.jmol.smiles.SmilesGenerator
- org.jmol.smiles.SmilesMatcher (implements org.jmol.api.SmilesMatcherInterface)
- org.jmol.smiles.SmilesMeasure
- org.jmol.smiles.SmilesParser
- org.jmol.smiles.SmilesStereo
- org.jmol.symmetry.SpaceGroup
- org.jmol.symmetry.SpaceGroupFinder
- org.jmol.adapter.readers.spartan.SpartanArchive
- org.jmol.adapter.readers.spartan.SpartanUtil
- org.jmol.g3d.SphereRenderer
- org.jmol.viewer.StateManager
- org.jmol.modelset.StateScript
- org.openscience.jmol.app.jmolpanel.StatusListener (implements org.jmol.api.JmolStatusListener, org.jmol.api.JmolSyncInterface, org.jmol.api.JSVInterface)
- org.openscience.jmol.app.janocchio.NMR_JmolPanel.MyStatusListener
- org.jmol.viewer.StatusManager
- org.jmol.adapter.smarter.Structure (implements java.lang.Cloneable)
- org.jmol.adapter.readers.cif.Subsystem
- org.jmol.jvxl.readers.SurfaceGenerator
- org.jmol.jvxl.readers.SurfaceReader (implements org.jmol.jvxl.api.VertexDataServer)
- org.jmol.jvxl.readers.SurfaceFileReader
- org.jmol.jvxl.readers.PolygonFileReader
- org.jmol.jvxl.readers.EfvetReader
- org.jmol.jvxl.readers.NffReader
- org.jmol.jvxl.readers.Pmesh4Reader
- org.jmol.jvxl.readers.PmeshReader
- org.jmol.jvxl.readers.KinemageReader
- org.jmol.jvxl.readers.MsmsReader
- org.jmol.jvxl.readers.ObjReader
- org.jmol.jvxl.readers.Ras3DReader
- org.jmol.jvxl.readers.VolumeFileReader
- org.jmol.jvxl.readers.ApbsReader
- org.jmol.jvxl.readers.CubeReader
- org.jmol.jvxl.readers.DelPhiBinaryReader
- org.jmol.jvxl.readers.IsoIntersectGridReader
- org.jmol.jvxl.readers.JaguarReader
- org.jmol.jvxl.readers.JvxlXmlReader
- org.jmol.jvxl.readers.JvxlReader
- org.jmol.jvxl.readers.MapFileReader
- org.jmol.jvxl.readers.BCifDensityReader
- org.jmol.jvxl.readers.CifDensityReader
- org.jmol.jvxl.readers.Dsn6BinaryReader
- org.jmol.jvxl.readers.MrcBinaryReader
- org.jmol.jvxl.readers.PyMOLMeshReader
- org.jmol.jvxl.readers.XplorReader
- org.jmol.jvxl.readers.BCifDensityReader
- org.jmol.jvxl.readers.PeriodicVolumeFileReader
- org.jmol.jvxl.readers.CastepDensityReader
- org.jmol.jvxl.readers.VaspChgcarReader
- org.jmol.jvxl.readers.PltFormattedReader
- org.jmol.jvxl.readers.UhbdReader
- org.jmol.jvxl.readers.XsfReader
- org.jmol.jvxl.readers.PolygonFileReader
- org.jmol.jvxl.readers.VolumeDataReader
- org.jmol.jvxl.readers.AtomDataReader
- org.jmol.jvxl.readers.AtomPropertyMapper
- org.jmol.jvxl.readers.IsoFxyReader
- org.jmol.jvxl.readers.IsoFxyzReader
- org.jmol.jvxl.readers.IsoIntersectAtomReader
- org.jmol.jvxl.readers.IsoIntersectReader
- org.jmol.jvxl.readers.IsoMepReader
- org.jmol.jvxl.readers.IsoMlpReader
- org.jmol.jvxl.readers.IsoMOReader
- org.jmol.jvxl.readers.IsoPlaneReader
- org.jmol.jvxl.readers.IsoSolventReader
- org.jmol.jvxl.readers.IsoShapeReader
- org.jmol.jvxl.readers.AtomDataReader
- org.jmol.jvxl.readers.SurfaceFileReader
- org.openscience.jmol.app.surfacetool.SurfaceStatus
- org.openscience.jmol.app.surfacetool.SurfaceTool
- org.jmol.script.SV.Sort (implements java.util.Comparator<T>)
- org.jmol.awtjs.swing.SwingConstants
- org.jmol.symmetry.Symmetry (implements org.jmol.api.SymmetryInterface)
- org.jmol.symmetry.SymmetryDesc
- org.jmol.symmetry.SymmetryInfo
- org.jmol.script.T
- org.jmol.script.ContextToken
- org.jmol.script.SV (implements javajs.api.JSONEncodable)
- javajs.util.T3 (implements javajs.api.JSONEncodable, java.io.Serializable)
- org.jmol.util.MeshCapper.CapVertex (implements java.lang.Cloneable)
- javajs.util.P3
- org.jmol.adapter.smarter.Atom (implements java.lang.Cloneable)
- org.jmol.adapter.readers.cif.TopoCifParser.TAtom (implements org.jmol.adapter.readers.cif.TopoCifParser.TPoint)
- org.jmol.adapter.readers.cif.TopoCifParser.TNode (implements org.jmol.adapter.readers.cif.TopoCifParser.TPoint)
- org.jmol.jvxl.readers.IsoSolventReader.Edge
- org.jmol.jvxl.calc.MarchingSquares.ContourVertex
- org.jmol.util.Point3fi (implements java.lang.Cloneable)
- org.jmol.quantum.QMAtom
- org.jmol.smiles.SmilesAtom (implements org.jmol.util.Node)
- org.jmol.symmetry.SpaceGroupFinder.SGAtom
- org.jmol.adapter.smarter.Atom (implements java.lang.Cloneable)
- javajs.util.V3
- org.jmol.util.Vibration
- org.jmol.util.ModulationSet (implements org.jmol.api.JmolModulationSet)
- org.jmol.util.Vibration
- javajs.util.T3i (implements java.io.Serializable)
- javajs.util.P3i
- org.jmol.g3d.TextString (implements java.util.Comparator<T>)
- javajs.util.P3i
- org.openscience.jmol.app.janocchio.TableSorter.Arrow (implements javax.swing.Icon)
- org.openscience.jmol.app.janocchio.TableSorter.Directive
- org.openscience.jmol.app.janocchio.TableSorter.Row (implements java.lang.Comparable<T>)
- org.openscience.jmol.app.janocchio.TableSorter.SortableHeaderRenderer (implements javax.swing.table.TableCellRenderer)
- org.openscience.jmol.app.janocchio.TableSorter.TableModelHandler (implements javax.swing.event.TableModelListener)
- org.jmol.util.TempArray
- org.jmol.util.Tensor
- org.jmol.modelset.Text
- org.jmol.g3d.TextRenderer
- org.jmol.render.TextRenderer
- java.lang.Thread (implements java.lang.Runnable)
- org.openscience.jmol.app.jmolpanel.console.AppConsole.ExecuteCommandThread
- org.openscience.jmol.app.InputScannerThread
- org.jmol.thread.JmolThread
- org.jmol.thread.AnimationThread
- org.jmol.script.CommandWatcherThread
- org.jmol.script.FileLoadThread
- org.jmol.thread.HoverWatcherThread
- org.jmol.minimize.MinimizationThread
- org.jmol.thread.MoveToThread
- org.jmol.navigate.Navigator (implements org.jmol.api.JmolNavigatorInterface)
- org.jmol.script.ScriptDelayThread
- org.jmol.script.ScriptQueueThread
- org.jmol.thread.SpinThread
- org.jmol.thread.TimeoutThread
- org.jmol.thread.VibrationThread
- org.openscience.jmol.app.janocchio.LoadMeasureThread
- org.openscience.jmol.app.janocchio.LoadMeasureThreadJSON
- org.openscience.jmol.app.janocchio.NmrReaderThread
- java.lang.Throwable (implements java.io.Serializable)
- java.lang.Exception
- org.jmol.smiles.InvalidSmilesException
- java.io.IOException
- org.jmol.viewer.JmolAsyncException
- org.jmol.script.ScriptException
- org.jmol.script.ScriptInterruption
- java.lang.Exception
- org.jmol.modelset.TickInfo
- org.jmol.adapter.readers.cif.TopoCifParser (implements org.jmol.adapter.readers.cif.CifReader.Parser)
- org.jmol.adapter.readers.cif.TopoCifParser.TNet
- org.jmol.modelset.Trajectory
- javax.swing.TransferHandler (implements java.io.Serializable)
- org.openscience.jmol.app.webexport.ArrayListTransferHandler
- org.jmol.viewer.TransformManager
- org.jmol.viewer.TransformManager4D
- org.jmol.util.TriangleData
- org.jmol.jvxl.calc.MarchingCubes
- org.openscience.jvxl.simplewriter.SimpleMarchingCubes
- org.jmol.util.Triangulator
- org.jmol.jvxl.calc.MarchingCubes
- org.jmol.multitouch.sparshui.TwoPointGesture (implements com.sparshui.gestures.Gesture)
- org.jmol.util.Txt
- org.jmol.symmetry.UnitCellIterator (implements org.jmol.api.AtomIndexIterator)
- org.jmol.minimize.Util
- org.jmol.adapter.readers.molxyz.V3000Rdr
- org.jmol.jvxl.data.VolumeData
- org.openscience.jvxl.simplewriter.VoxelDataCreator
- org.jmol.smiles.VTemp
- org.openscience.jmol.app.webexport.Widgets
- org.openscience.jmol.app.webexport.Widgets.Widget
- org.openscience.jmol.app.webexport.Widgets.AnimationWidget
- org.openscience.jmol.app.webexport.Widgets.BackgroundColorWidget
- org.openscience.jmol.app.webexport.Widgets.ConsoleWidget
- org.openscience.jmol.app.webexport.Widgets.DownLoadWidget
- org.openscience.jmol.app.webexport.Widgets.SpinOnWidget
- org.openscience.jmol.app.webexport.Widgets.StereoViewWidget
- java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
- org.openscience.jmol.app.janocchio.CoupleTable.CoupleListWindowListener
- org.openscience.jmol.app.jmolpanel.JmolPanel.AppCloser
- org.openscience.jmol.app.jmolpanel.MeasurementTable.MeasurementListWindowListener
- org.openscience.jmol.app.janocchio.NoeTable.NoeListWindowListener
- org.openscience.jmol.app.jmolpanel.PovrayDialog.PovrayWindowListener
- org.openscience.jmol.app.jmolpanel.Splash.WindowListener
- org.jmol.jvxl.readers.XmlReader
- org.jmol.adapter.readers.xml.XmlReader.NVPair
- org.jmol.adapter.writers.XSFWriter (implements org.jmol.api.JmolWriter)
- org.jmol.adapter.smarter.XtalSymmetry
- org.jmol.adapter.writers.XtlWriter
- org.jmol.adapter.writers.CIFWriter (implements org.jmol.api.JmolWriter)
- org.jmol.adapter.writers.PWMATWriter (implements org.jmol.api.JmolWriter)
- org.jmol.export.___Exporter
Interface Hierarchy
- org.jmol.atomdata.AtomDataServer
- org.jmol.api.AtomIndexIterator
- org.jmol.modelset.BondIterator
- org.jmol.adapter.readers.cif.CifReader.Parser
- org.jmol.awtjs.swing.ColumnSelectionModel
- org.jmol.quantum.mo.DataAdder
- org.jmol.awtjs.swing.Document
- org.openscience.jmol.app.jmolpanel.console.EnterListener
- org.jmol.api.EventManager
- org.jmol.api.FontManager
- org.jmol.api.GenericPlatform
- org.jmol.g3d.G3DRenderer
- org.jmol.api.js.GenericConsoleTextArea
- org.jmol.api.GenericFileInterface
- org.jmol.api.GenericGraphics
- org.jmol.api.GenericImageDialog
- org.jmol.api.GenericMenuInterface
- org.jmol.api.GenericMouseInterface
- org.jmol.console.GenericTextArea
- org.jmol.awtjs.swing.HTMLElement
- org.jmol.awtjs.swing.HTMLWindowEvent
- javajs.api.js.J2SObjectInterface
- org.jmol.api.js.JmolToJSmolInterface
- org.jmol.api.JmolAbstractButton
- org.jmol.api.JmolAdapterAtomIterator
- org.jmol.api.JmolAnnotationParser
- org.jmol.api.JmolAppAPI
- org.jmol.api.JmolAppConsoleInterface
- org.jmol.api.JmolAudioPlayer
- org.jmol.api.JmolCallbackListener
- org.jmol.api.JmolStatusListener
- org.jmol.viewer.JmolChimeMessenger
- org.jmol.api.JmolDataManager
- org.jmol.api.JmolDialogInterface
- org.jmol.api.JmolDropEditor
- org.jmol.api.JmolScriptEditorInterface
- org.jmol.api.JmolEnvCalc
- org.jmol.awt.JmolFrame
- org.jmol.api.JmolGestureServerInterface
- org.jmol.api.JmolGraphicsInterface
- org.jmol.api.JmolRendererInterface
- org.jmol.api.JmolInChI
- org.jmol.api.JmolJDXMOLParser
- org.jmol.api.JmolJDXMOLReader
- org.jmol.api.JmolJSpecView
- org.jmol.api.JmolMeasurementClient
- org.jmol.api.JmolModulationSet
- org.jmol.api.JmolMovieCreatorInterface
- org.jmol.multitouch.JmolMultiTouchAdapter
- org.jmol.multitouch.JmolMultiTouchClient
- org.jmol.api.JmolNMRInterface
- org.jmol.api.JmolParallelProcessor
- org.jmol.api.JmolPatternMatcher
- org.jmol.api.JmolPdfCreatorInterface
- org.openscience.jmol.app.JmolPlugin
- org.jmol.api.JmolPropertyManager
- org.jmol.api.JmolRepaintManager
- org.jmol.api.JmolSceneGenerator
- org.jmol.api.JmolScriptEvaluator
- org.jmol.api.JmolScriptFunction
- org.jmol.api.JmolScriptManager
- org.jmol.api.JmolSelectionListener
- org.jmol.api.JmolSyncInterface
- org.jmol.api.JmolAppletInterface
- org.jmol.api.JmolTouchSimulatorInterface
- org.jmol.api.JmolWriter
- org.jmol.api.JmolZipUtilities
- javajs.api.js.JSAppletObject
- org.jmol.api.js.JSmolAppletObject
- org.jmol.api.js.JSConsole
- org.jmol.consolejs.JSConsole
- org.openscience.jmol.app.jsonkiosk.JsonNioClient
- org.openscience.jmol.app.jsonkiosk.JsonNioServer
- org.jmol.api.JSVInterface
- org.jmol.awtjs.swing.ListSelectionModel
- org.jmol.util.LoggerInterface
- org.jmol.adapter.smarter.MSInterface
- org.jmol.api.PlatformViewer
- org.jmol.popup.PopupHelper
- org.jmol.api.PymolAtomReader
- java.lang.Runnable
- org.jmol.api.JmolFilesReaderInterface
- org.jmol.api.JmolNavigatorInterface
- org.jmol.api.SC
- org.jmol.util.SimpleEdge
- org.jmol.util.SimpleNode
- org.jmol.util.Node
- org.jmol.api.SmilesMatcherInterface
- org.openscience.jmol.app.SplashInterface
- org.jmol.modelset.Structure
- org.jmol.awtjs.swing.SwingController
- org.jmol.api.SymmetryInterface
- org.jmol.awtjs.swing.TableCellRenderer
- org.jmol.awtjs.swing.TableColumn
- org.jmol.awtjs.swing.AbstractTableModel
- org.jmol.adapter.readers.cif.TopoCifParser.TPoint
- org.jmol.api.Translator
- org.jmol.jvxl.api.VertexDataServer
- org.jmol.jvxl.api.MeshDataServer
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- org.jmol.modelsetbio.AlphaPolymer.Code
- org.jmol.c.CBK
- org.jmol.shapespecial.Draw.EnumDrawType
- org.jmol.util.Edge.EnumBondOrder
- org.jmol.c.FIL
- org.jmol.c.HB
- org.jmol.c.PAL
- org.jmol.atomdata.RadiusData.EnumType
- org.jmol.c.STER
- org.jmol.c.STR
- org.jmol.c.VDW
- org.jmol.viewer.Viewer.ACCESS
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)